PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG470600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 226aa    MW: 24514.6 Da    PI: 4.7903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG470600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-1357103455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ e+ErrRR r+Ns +  Lr ++P+      +K+sK ++L  A+++Ik+Lq
  Pavir.2KG470600.1.p  57 KNLEAERRRRGRLNSNILALRAVVPNI-----TKMSKESTLADAIDHIKKLQ 103
                          56799*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-1253106No hitNo description
SuperFamilySSF474591.09E-1653118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.06653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1455114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1056103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPRRQRARSS EELKAEDFVD SVLNFGGAGG GDEGGEEGEG EAGGADGQPA ATEYKSKNLE  60
AERRRRGRLN SNILALRAVV PNITKMSKES TLADAIDHIK KLQNQVLELQ QQLADSPGEA  120
WEKQGSASCS ESFAAAENMP YQGQVELVPL GPYKYHLKVF CKKAGIFTKV LEALCSYNAQ  180
VTSMSTITFY GYAESVFCIE VKGEQDVVMV ELRSLLSSIV EVPNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460833.11e-133hypothetical protein SORBIDRAFT_02g035870
SwissprotB9FXT35e-92UDT1_ORYSJ; Transcription factor UDT1
TrEMBLK4A1H41e-135K4A1H4_SETIT; Uncharacterized protein
STRINGSi032717m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-15bHLH family protein